Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015921652.1_cds_XP_016470564.1_63001
CDS Infomation

[gene=LOC107792831] [db_xref=GeneID:107792831] [protein=chromodomain-helicase-DNA-binding protein 3-like isoform X5] [protein_id=XP_016470564.1] [location=join(65606..65731,65814..66101,66986..67123,67593..67847,68640..68777,68847..69167,69288..69461,69761..70709,70807..70985,72034..72426,72566..72770,73143..73648)] [gbkey=CDS]
Sequence

ATGCAAAAGCGGGAGTATTTAGTAAAGTACAAAGGTCTTGCTCATGTTCATAATCGCTGG
ATTACAGAGAAGCAGCTGCTTCTTGAGGCTCCAGCAGCCCTTAGAAGATTCAAGAAAAAA
AACAAGAGTGTAAGTTGGAAAACTGAATGGAGTCTTCCCCATCGTTTACTAGACAAGAGG
TTGATAGCAGTTACAGATCACAACAACACTCACGTGCATGGGATTGATGAAAATGATGCA
GATTGCCATTATGAGTGGCTTGTGAAATGGACAGGTCTGGGCTACAGTCATGCCACATGG
GAAGTGGAGAATGCTTCATTTCTAAGGTCGCTTGAGGCGGTCAAACTCATGACTAATTAT
GAAATCCGACATCAGCAGGCTACGAAAGAGTTGCATCCTTTGACGGAAGATGAGAAAAGG
AAAGCCGACTATCAAGAACTGCCGAGACCTCTATTTGGAAGCGCTCCTCAGGTCCATAAT
CATCTTACTTATATCAACACTCTTCGTAAATATTGGCAGAAGGGTCAGAGTGCTGTCGTC
ATTGATGACCAGGAGCGGATTTTGAAGGTGGTCTTATTTCTATTATCCTTGCCCAAGGAT
ATTGGTTTGCCTTTTCTCATAATCACAACTTCTGCTGAACTTCCTCTTTGGGAAGCTGAG
TTCTTACATTGGGCATTTTCTGCTAACATTGTTGTGTACAAAGGTAATAAAGATATACGA
GCAATTATAAGGACACTCGAGTTTCACAACAAACAAGGTGCCATTATGTTTCAGGTTCTT
CTGTCACCTTATGATGCTATTGTTGAGGATCTTGAAATGCTTCAGCCAATAAGCTGGGGA
GCAGTAATTATAGATCAGTGCCAGGGTTCTGCCATGTCAATGCTTCTCTCACAAATTAAA
GTGCTTGTTTCTGATATGAGATTGCTTATTTTCCGTCAACTAGAGGGTAGATGTGATAGA
GGGTTCAATCACAGTAATGTTCTCTCTTTACTTTATCCTGAGTATGACAAGGCCGACAAT
GATCTGTCGTACACTGATCCCAACATAGACCTAACTGAATTCAAGGAAAGGTTAAAGCGC
TTTGTTGCATATGAGTGCAACTCCTCCACATCCAAGTTCATTGAGTACTGGGTTCCAGTC
AAACTCTCCAATGAACAAATTGAGCAATACTGCAATTGCCTCTCTTCGAATTCAGCTTTG
CTTTGCTCACGTTGGAAGAATGACTCACCAAATTCCCTCCACAACATACTTGTATCTACC
AGGAAGTGTTGTGATCACCCTTATCTCGAAGACCGGTCTCTGCGAGACATAGTTCTAGAA
GGAATTCCTGTAGATCAGCACTTTGATGCTGAAATTAAACTAAGTGGAAAATTGGAATTC
CTCTATAAGATTCTTCGTGAGATCAAACAGCAAGGACAAAGAGTACTCATTCTTTTTCGG
TCTCTTGGTGGCTCGGGGGTTATTTCCATCGGGGACATCTTGGATGATTTTATTCATCGA
AAATTTGGTGAGGATTCTTATACACGCATTAGTGGGGAATTCAGTCGTAAATTGAAGCAA
GCTACCTTGAACAAGTTCAACAATGAGGGAAGTGGGAAATTTGCTTGTTTGATGGAGACT
CGTGTTTGTGCTCCTAGTGTCAAGCTTTCGAGAATAGATACAATTATTTTGTTTAACAGT
GACTGGGACCCAACAAATGATTTAAGATCCCTGCAGAAGATTGCAATTTATTCAAAATTG
GAGCAAATAAAGGTACTCCGTCTATATTCATATTTTACTGTTGAAGAGAAAGCACTCATT
CTTGCAAAGCAAGGTATGACAATTGACAGCAACATAGAGAATATAAAACAATTCCATGAG
CTGCTAACTTGGGGTGCCTCTTTTCTTTTCAAAATGCTTGATTGTTTCCATGTACAATCT
TCACAATCAAAAAGATCGTCTGACATTGCTGCTTTAGATGATGTCTTTGCTGAATTGTTA
GGCCTGATATCTAGTAATAGTGAGAACAGTGATTATAACAGCTGTTCAAAGATATTGAAA
GTGCAGCAGAATGGAGGGACTTATCCAAGAAACATATCTCTACTTGGTGAAGTGGAAATG
CAACTGATGGATGATTCTTCTTTTGTGAGAGGAATGACGAATGAATTTCCCAACGTTTTC
TGGACAAGTCTGTTACATGGAACGGTTCGTAGGTGGAAACACTTGCCTAGACTATCACAA
GGGATTAGAAGGAAAGTTAGACCCCGGGTTGATTTGTGTCAGCCATCCGAAAGGGAACAA
GTTTCTGAAAAGAAAGGCAGGAAAGAGGGCAATAAAGTTCATCTTACTCCAGAACCCAAG
TTAAGGACGAAAAGGAAATTGCATGTCCAGGGAAAGAGACTCAAACTTGGGATGTCTCAT
CTTTCTGCTGGTAATAAGTATAAATGCAGGCGTCTTGTGACTAATCCCAGTCTGCAGTGC
GATATTGACCGGCAAGGTAGAGCAGCTATTGACAAGGTTCAGTCCCGAGTTGGCTTAACC
ATGACTGATCAGCATCGAAAAGAAAGTATTTCCATGAAATCAAATCAGCTGCCAGATTCC
AATTTGCCCGCCTCTACTGGCCGTGATCAAGCTCATGCATTTGTGCCCATTGACAATCAC
CAGAGCCATAGGAATTGTATTGATTCTTCCAGTCACCAGGTTTTAGATTTCATGGACCTT
CAGCCAGAGGAGTTGAATTTTCCAATAGACTCTTCTATTCAGTGGTCTACAGGAAATTTG
CTACTGCAACAACATACGAGTACAGGTGCAGGAAACGATGCGAGTATGAGAAGCAGAAAC
AGCCAGGAATATCAATGTCGTCCTGATGCCTCTCCAGACGCATCTGAGCTGCTTCAATCC
CCTTGCCCATACCCACTTCAAATGGAGATGGAGAGGATACTAAAGGAGAGAGAACAAACT
ACAAAATTGCATGAAAATCTGAATTTGCTCCTGATATCTGAATATGAAAAAGAGCTAGAT
GCGATAAAGAAGAAGTATGATTTGCTGTTTGAGATTGCTGACACAGAATTAGTTCAAAAG
CACAAAGACCTTGATACACTCTACAACAAAGTGCATATGAACAAGTTACTAGCTGAAGCC
ATGACCCAGATACAAAATACTGCTTGGTCACTAGAGATGACAGAAGGAACTGGACAATCA
TCACCAAGCAGACCTAGTAGAGTCCCGGCAGTGACTGCTGCATCAACACAACCAGCAAGT
CAATCATCAAATATTCTAAACTATCCAAGTTTAGTTTCTGAACCTGTCAACTCAGAGCAA
CGAGCTGCGGACCATCAAATATCCTCTCAGAATTTTTCAATGGCTGTCATTCCATCTCAA
AATGCTGAATTGCCTATAGTGACAGAGTCAGCTGCAGTTCCGCCAACAAGTGCAAGGGTC
ACCCTGCAAACGACAACCTCTGCTAATCTGCCGATAAGTGGTTCACCTATGACCCCAACA
CGAAACTTGCAGCCTGTCATCCTCACACCATTTTTATCGACTAGTGTTCCAAGTCAACTC
TCGATCCAAACTTTTAGTTATGCGGCGAGCCCTGCAACAAGCTGTGTACTAAGGGCACCA
GCTCCACATCTGAGACATTTTAGACCACTGCCAACAATGAATTCTTGGAATTCCAGCCTG
TTGCAGTGGTGA

Peptide Sequence

PEP ID

XP_016470564.1
PEP Infomation

PREDICTED: chromodomain-helicase-DNA-binding protein 3-like isoform X5 [Nicotiana tabacum]
Sequence

MQKREYLVKYKGLAHVHNRWITEKQLLLEAPAALRRFKKKNKSVSWKTEWSLPHRLLDKR
LIAVTDHNNTHVHGIDENDADCHYEWLVKWTGLGYSHATWEVENASFLRSLEAVKLMTNY
EIRHQQATKELHPLTEDEKRKADYQELPRPLFGSAPQVHNHLTYINTLRKYWQKGQSAVV
IDDQERILKVVLFLLSLPKDIGLPFLIITTSAELPLWEAEFLHWAFSANIVVYKGNKDIR
AIIRTLEFHNKQGAIMFQVLLSPYDAIVEDLEMLQPISWGAVIIDQCQGSAMSMLLSQIK
VLVSDMRLLIFRQLEGRCDRGFNHSNVLSLLYPEYDKADNDLSYTDPNIDLTEFKERLKR
FVAYECNSSTSKFIEYWVPVKLSNEQIEQYCNCLSSNSALLCSRWKNDSPNSLHNILVST
RKCCDHPYLEDRSLRDIVLEGIPVDQHFDAEIKLSGKLEFLYKILREIKQQGQRVLILFR
SLGGSGVISIGDILDDFIHRKFGEDSYTRISGEFSRKLKQATLNKFNNEGSGKFACLMET
RVCAPSVKLSRIDTIILFNSDWDPTNDLRSLQKIAIYSKLEQIKVLRLYSYFTVEEKALI
LAKQGMTIDSNIENIKQFHELLTWGASFLFKMLDCFHVQSSQSKRSSDIAALDDVFAELL
GLISSNSENSDYNSCSKILKVQQNGGTYPRNISLLGEVEMQLMDDSSFVRGMTNEFPNVF
WTSLLHGTVRRWKHLPRLSQGIRRKVRPRVDLCQPSEREQVSEKKGRKEGNKVHLTPEPK
LRTKRKLHVQGKRLKLGMSHLSAGNKYKCRRLVTNPSLQCDIDRQGRAAIDKVQSRVGLT
MTDQHRKESISMKSNQLPDSNLPASTGRDQAHAFVPIDNHQSHRNCIDSSSHQVLDFMDL
QPEELNFPIDSSIQWSTGNLLLQQHTSTGAGNDASMRSRNSQEYQCRPDASPDASELLQS
PCPYPLQMEMERILKEREQTTKLHENLNLLLISEYEKELDAIKKKYDLLFEIADTELVQK
HKDLDTLYNKVHMNKLLAEAMTQIQNTAWSLEMTEGTGQSSPSRPSRVPAVTAASTQPAS
QSSNILNYPSLVSEPVNSEQRAADHQISSQNFSMAVIPSQNAELPIVTESAAVPPTSARV
TLQTTTSANLPISGSPMTPTRNLQPVILTPFLSTSVPSQLSIQTFSYAASPATSCVLRAP
APHLRHFRPLPTMNSWNSSLLQW

Transcript Sequence

Gene sequence data has not been registered.